References of interest
References
Boss DR550 mkII Manual PDF
Macclade Manual PDF
Dayhoff, M.O., Schwartz, R.M., and Orcutt, B.C., 1978 A model of evolutionary change in proteins. in Atlas of Protein Sequence and Structure. National
Biomedical Research Foundation, Washington, DC, Vol 5 Suppl. 3, pp. 345-352.
PDF
Jones, D.T., Taylor, W.R., and Thornton, J.M., 1992 The rapid generation of mutation data matrices from protein sequences. Computer Applications in the Biosciences: CABIOS
8(3):275-282.
PDF
Yang, Z., 1994 Estimating the pattern of nucleotide substitution. J Mol Evol 39(1):105-111.
PDF
Jordan, I.K., Kondrashov, F.A., Adzhybel, I.A., Wolf, Y.I., Koonin, E.V., Kondrashov, A.S., and Sunyaev, S., 2005 A universal trend of amino acid gain and
loss
in protein evolution. Nature 433:633-638.PDF
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